5 from 7 votes
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Lemon Poppyseed Protein Muffins

These Lemon Poppyseed Protein Muffins are a bright and satisfying way to start your day. With fresh lemon flavor and 12 grams of protein, they are perfect for make-ahead breakfasts or an on-the-go morning snack.
Lemon Poppyseed Protein Muffins on a white plate with a cup of coffee, over a yellow flowered napkin.

Pucker up, Buttercup, and head to the kitchen to make these lemon protein muffins. They have all the bright, citrusy flavor you crave, and they’re easy to make too. A perfect treat to wake up your senses on a dreary morning!

Thanks to a blend of cottage cheese and protein powder, they deliver a soft, moist crumb that practically melts in your mouth. They are a delightful addition to any high protein, low carb breakfast. And diehard lemon lovers might even want to spread them with a little keto lemon curd!

Lemon Poppyseed Protein Muffins piled up on a white plate with lemons in the background.


 

Sometimes I need a reminder about how much I love lemon. I tend to reach for chocolate treats over and above anything else. But whenever I taste it, I am always amazed by how that tangy bright flavor dances on my tongue.

It’s what makes recipes like keto lemon cheesecake bars and keto lemon sugar cookies so popular. And I know my fellow lemon lovers will be delighted with this new muffin recipe. The fact that it adds 12 grams of protein doesn’t hurt either!

Lemon Poppyseed Protein Muffins on a white plate with a cup of coffee, over a yellow flowered napkin.

Why You Will Love This Recipe

  • Bright citrus flavor: Fresh lemon juice and zest give these muffins that classic lemon poppyseed taste.
  • High-protein: Made with cottage cheese and protein powder, they are a great way to add a little more protein into your day.
  • Keto and gluten-free: No grains, gluten, or sugar!
  • Moist and tender: Cottage cheese helps create an incredibly soft, tender texture that is out of this world.
  • Great for meal prep: They store and freeze beautifully. Perfect for quick high protein snacks.

Ingredient Notes

Top down image of ingredients for Lemon Poppyseed Protein Muffins.
  • Cottage cheese:  Any percentage of milk fat should work well in these muffins. If you prefer, you can use ricotta but it’s a little lower in protein.
  • Almond flour: Fine blanched almond flour will give you the best texture for all your keto baked goods.
  • Sweetener: I recommend an erythritol based sweetener so the muffins don’t get too dark. Allulose can work but it may brown the muffins a lot faster, particularly on the bottoms.
  • Protein powder: Whey protein powder or egg white protein powder work best. Plant based will work but may change the color of your muffins. Do not use collagen as it will make them very gummy and hard to cook through.
  • Lemon: You will need the zest and juice from a lemon.
  • Poppy seeds: The addition of poppy seeds adds delicious crunch and a unique flavor.
  • Baking staples: Eggs, baking powder, and salt.

How to Make Lemon Poppyseed Protein Muffins

A collage of 6 images showing how to make Lemon Poppyseed Protein Muffins.
  1. Blend the wet ingredients: Place the cottage cheese, eggs, and sweetener in a blender and blend until smooth.
  2. Blend the dry ingredients: Add the almond flour, protein powder, baking powder, and salt, and blend again.
  3. Add the lemon: Zest the lemon and add to the blender, then squeeze in fresh lemon juice.
  4. Add the poppy seeds: Stir them into the batter by hand, so they don’t get blended up.
  5. Bake the muffins. Divide the batter between the muffin cups and bake until the tops are puffed and just firm to the touch.
  6. Enjoy!

Tips for Success

Blend the batter: Don’t skip this, as it makes the batter silky smooth and avoids little clumps of cheese in the muffins.

Don’t over-bake: Protein powder has a way of drying out baked goods if you cook them too long. Make sure to take them out the minute the tops are puffed and set to the touch, with no sponginess underneath.

Let them cool, but not too long! I found that once the muffins were fully cool, they started sticking to the silicone liners. My recommendation is to cool them 15 to 20 minutes, then gently remove them from the muffin liners.

Boost the lemon if you love tang: A little lemon extract or extra zest takes them into bakery-style territory.

Lemon Poppyseed Protein Muffins on a white plate with a cup of coffee, over a yellow flowered napkin.
5 from 7 votes

Lemon Poppyseed Protein Muffins

Servings: 12 muffins
Prep Time 10 minutes
Cook Time 30 minutes
Total Time 40 minutes
These Lemon Poppyseed Protein Muffins are a bright and satisfying way to start your day. With fresh lemon flavor and 12 grams of protein, they are perfect for make-ahead breakfasts or an on-the-go morning snack.

Ingredients
 

Instructions

  • Preheat the oven to 325ºF and line a standard muffin pan with 12 silicone or parchment liners.
  • Place the cottage cheese, eggs, and sweetener in a blender and blend until smooth.
  • Add the almond flour, protein powder, baking powder, and salt, and blend again. Then add the lemon zest and lemon juice and blend until everything is incorporated.
  • If the batter is overly thick, add more liquid 1 tablespoon at a time until it is a thick but pourable batter. Stir in the poppyseeds.
  • Divide the batter between the muffin cups, filling almost all the way to the top. Bake 25 to 30 minutes, until the tops are puffed and just firm to the touch.
  • Remove and let cool in the pan. But make sure to get them out of the silicone liners soon after they are cool to the touch (they tend to start sticking again as they cool off).

Notes

Storage Information: Because of the high moisture content in these muffins, I recommend storing them in the fridge in a covered container. They will be good for up to a week. You can also freeze them for several months. 
Sweeteners: I recommend an erythritol-based sweetener so that the muffins don’t over-brown. If you choose to use allulose, lower the temperature by 25 degrees and keep a close eye on them in the oven. 

Nutrition

Serving: 1muffin | Calories: 148kcal | Carbohydrates: 5.2g | Protein: 11.5g | Fat: 10.3g | Saturated Fat: 1.5g | Fiber: 2g
I’d love to know your thoughts, leave your rating below!

Frequently Asked Questions

Can I taste the cottage cheese?

No. Once blended and baked into the muffin, the flavor disappears. All you’ll notice is a moist, tender muffin with a bright, fresh flavor.

Can I make these dairy-free?

This recipe relies on the protein and moisture from cottage cheese or ricotta. I don’t know that there is a good replacement for that without ruining the consistency.

How many carbs are in Keto Lemon Poppyseed Protein Muffins?

These lemon poppyseed protein muffins have 5.2g of carbs and 2.0g of fiber per serving. That comes to 3.2g net carbs per muffin.

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Nutritional Disclaimer

Please note that I am not a medical or nutritional professional. I am simply recounting and sharing my own experiences on this blog. Nothing I express here should be taken as medical advice and you should consult with your doctor before starting any diet or exercise program. I provide nutritional information for my recipes simply as a courtesy to my readers. It is calculated using MacGourmet software and I remove erythritol from the final carb count and net carb count, as it does not affect my own blood glucose levels. I do my best to be as accurate as possible but you should independently calculate nutritional information on your own before relying on them. I expressly disclaim any and all liability of any kind with respect to any act or omission wholly or in part in reliance on anything contained in this website.

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5 from 7 votes

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Recipe Rating




19 Comments

  1. 5 stars
    Wonderful flavor and texture. I did take them out of the oven at 18 minutes as they were done baking.

  2. I’ll have to try this.

  3. Bonnie Lane - Winchester, VA says:

    5 stars
    Carolyn, I ABSOLUTELY LOVE these muffins!! I’ve made them for myself and made them for a friend who recently lost her son. I wanted to give her something protein packed to help get her through this sad time with so much to do. QUESTION: I would like to simply make this recipe as a sliceable loaf part of the time. Can I just pour the batter into my 8 1/2 by 4 1/2 pan and bake for 25 to 30 minutes? Great recipe!!!

  4. I have them in the oven! The batter was quite thick so I used 2 more tablespoons of lemon juice to thin them out. And I was positive I had poppyseeds but as it turns out I did not. Instead I dropped 5 Lillys dark chocolate chips into each muffin. The batter tasted great and they smell lovely in the oven. Looking forward to Sunday cuppa tea with one of these! Ty for the recipe.

  5. Marcie Levine says:

    I’m making these now and they are thick. Your recipe says to add more liquid, but what type? The only liquid in the recipe is lemon juice or egg, I’m going to try more lemon juice, but just curious what you had in mind?

  6. 5 stars
    Quick recipe to whip up and the texture of the muffin is perfect. My only wish is that the muffin would rise a little more for a nice muffin top, but the flavor is on point! I added lemon extract for an extra pop of flavor.

  7. 5 stars
    I baked these this evening and they are wonderful. My husband also loves them. They baked perfectly in 30 minutes. The lemon flavor is vibrant. I used soy protein powder- it’s what I always use for baking but I’m going to try unflavored whey next time to see if there’s a difference. Thank you!!

  8. Jo Petersen says:

    I made these the other day and sadly (oops) looked too long. That said, they c were easycsnd tasty, although not as strong a lemon flavor as I hoped. when I make next time I will try adding a bit of lemon extract.
    I also made the cranberry muffins, which I love, so I am fixed for muffins for a while. Thanks for your excellent recipes.

  9. 5 stars
    Another great protein muffin option! I rotate through all of these recipes and they’re all great! This one was super easy to make and tastes great. Thanks for all the time you put into recipe creation, Caroline!

  10. 5 stars
    The lemon poppyseed muffins are delicious! And, more importantly, they were easy to make without making a mess in my kitchen. Will definitely make them again soon since I already have the poppyseeds!

  11. DeAnn Davies says:

    5 stars
    These are tasty! I am saving this recipe!

  12. These muffins will definitely be on my to bake list this week. I’m really getting into using cottage cheese for many things. Next up will be ice cream. Would you be doing a recipe for that soon?
    One more thing. I made your sticky toffee pudding for Christmas. So beyond delicious I probably won’t wait to make again. The caramel sauce. Fantastic! Thank you for what you do.

  13. Barbara Logan says:

    Just curious (because I happen to have some) – is collagen protein powder a good substitue for whey protein powder?

      1. May I use whey protein isolate ? I’m not sure what the difference between just regular whey protein vs isolate …

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