
Healthy keto protein muffins that taste like cinnamon rolls! These tender low carb muffins have a buttery sweet cinnamon filling and pack 11g of protein per serving.

Who doesn’t love a sweet, sticky, tender cinnamon roll? But those of us who keep our health in mind know to steer clear of these gooey breakfast pastries. We give them a wide berth, because as tasty as they are, they just aren’t worth the risk.
Thankfully, you can enjoy those same flavors in healthier ways. I have any number of recipes to enjoy, from classic keto cinnamon rolls to cinnamon roll cheesecakes. And these Cinnamon Roll Protein Muffins are my new favorite way to indulge!
I’ve been eating them daily before my workouts and they are a sweet way to start my day. It’s a wonderful high protein breakfast recipe.

Why you’ll love these muffins
If you’re going to enjoy a cinnamon roll flavored treat, why not make it work a little harder for you and pack it full of protein too? Made with cottage cheese and protein powder, these muffins have 11g grams of protein and less than 5g of carbs per serving.
They really are delicious. The muffin is tender and the cinnamon filling is sweet and buttery. The glaze on top is entirely optional and not even necessary, in my opinion. Although it does make them look make them look more like real cinnamon rolls!
And these keto protein muffins are easy to make, too. Whip the batter up in a blender, swirl in the cinnamon filling, and bake them up. Before long, you are enjoying low carb, high protein cinnamon roll goodness!
Ingredients you need

- Butter: You want the butter softened, almost melted, prior to mixing.
- Sweetener: The filling works best with a combination of brown sugar substitute and some allulose so it stays gooier. You will want a powdered sweetener if you choose to add the glaze.
- Ground cinnamon: You can’t make cinnamon rolls without cinnamon! Make sure yours is fresh, as old spices lose their flavor over time.
- Cottage cheese: I used whole milk cottage cheese but 2% should work just as well.
- Eggs: Use large eggs and make sure they are room temperature.
- Almond flour: Use blanched, finely ground almond flour for keto muffin recipes like this one.
- Protein powder: I used unflavored whey protein for this recipe. Egg white may work as well but I don’t recommend plant protein or collagen protein.
- Pantry staples: Heavy cream, vanilla extract, baking powder and salt.
Step by step directions

1. Make the cinnamon swirl: In a medium bowl, stir together the butter, sweeteners, and cinnamon. The butter should be almost melted but not quite, and the mixture should be like a thin paste. Set aside.
2. Prepare the muffin batter: In a blender, combine the cottage cheese, eggs, sweetener, and vanilla, and blend until smooth. Add the almond flour, whey protein, baking powder, and salt and blend again until smooth.
3. Assemble the muffins: Line the wells of two muffin pans with silicone or parchment liners and fill each muffin cup about half full with the batter. Then add half a teaspoon of the cinnamon swirl into the center of each muffin and swirl lightly with a toothpick or the end of a small spoon. Take care not to push the cinnamon mixture toward the bottom of the muffin.
4. Bake the muffins: Divide the remaining batter overtop, then add more cinnamon swirl and swirl it in. Bake at 325ºF for 15 to 20 minutes, until the muffins are puffed and golden brown. The very top may not seemed cooked through because of the buttery cinnamon mixture, but it will set when they cool.
5. Make the drizzle: While the muffins cool, whisk together the sweetener and heavy whipping cream in a small bowl. Add water in tiny amounts until a drizzling consistency is achieved. Drizzle over the cooled muffins.
Tips for Success

One of the most important things when making these protein muffins is that you don’t push the cinnamon mixture toward the bottom of the muffin. I did that with a few of them and it’s so buttery that the bottoms come off the muffins as you try to get them out of the liners.
I tried this recipe with both almond flour and coconut flour, and I found that the coconut flour made it very rubbery and eggy. So I can’t recommend it.
Whey protein powder works best here but egg white protein may work as well. Plant protein will likely have too strong a flavor, and collagen will make them gummy.
Sweetener Options
For the filling, you will want a brown sugar replacement. But if you can add a tablespoon of allulose or xylitol as well, it helps make it gooier. If not, it will still be delicious!
The muffin batter can be made with your favorite sweetener. I deliberately didn’t sweeten it as much because the filling adds so much sweetness.
The drizzle requires a powdered sweetener to work properly.

Frequently Asked Questions
This funny curdy cheese is a healthy addition to your low carb diet. Each ½ cup serving of cottage cheese has 12 to 14 grams of protein and only 3 to 5 grams of carbohydrate. I really like the Good Culture brand, for the probiotics as well.
Store these muffins on the counter in a covered container for up to 4 days or in the fridge for up to a week. You can also freeze them for several months.
These keto protein muffins have 4.4g of carbs and 1.7g of fiber per serving. That comes to 2.7g net carbs per muffin.


Cinnamon Protein Muffins Recipe
Ingredients
Cinnamon Swirl
- 1/4 cup (56.75 g) butter, softened, almost melted
- 1/4 cup (50 g) brown sugar replacement
- 1 tbsp allulose, or xylitol
- 1 tbsp ground cinnamon
Muffins
- 3/4 cup (157.5 g) cottage cheese
- 3 large eggs
- 1/3 cup (60.67 g) Swerve Sweetener, (or other granular sweetener)
- 1 tsp vanilla extract
- 1 3/4 cup (196 g) almond flour
- 3/4 cup (81 g) unflavored whey protein powder
- 2 tsp baking powder
- 1/4 tsp salt
Drizzle (optional)
- 1/3 cup (41.67 g) Swerve Confectioners
- 1 tbsp heavy whipping cream
- Water as needed
Instructions
Cinnamon Swirl
- In a medium bowl, stir together the butter, sweeteners, and cinnamon. The butter should be almost melted but not quite, and the mixture should be like a thin paste. Set aside.
Muffins
- Preheat the oven to 325ºF and line the wells of two muffin pans with silicone or parchment liners. If you only have one pan, you may need to work in batches.
- In a blender, combine the cottage cheese, eggs, sweetener, and vanilla, and blend until smooth. Add the almond flour, whey protein, baking powder, and salt and blend again until smooth.
- Fill each muffin cup about half full with the batter. Then add half a teaspoon of the cinnamon swirl into the center of each muffin and swirl lightly with a toothpick or the end of a small spoon. Take care not to push the cinnamon mixture toward the bottom of the muffin.
- Divide the remaining batter overtop, then add more cinnamon swirl and swirl it in.
- Bake 15 to 20 minutes, until the muffins are puffed and golden brown. The very top may not seemed cooked through because of the buttery cinnamon mixture, but it will set when they cool.
- Remove and let cool 20 minutes, then transfer to a wire rack to cool completely.
Optional Drizzle
- In a small bowl, whisk together the sweetener and heavy whipping cream. Add water in tiny amounts until a drizzling consistency is achieved. Drizzle over the cooled muffins.
Notes
Nutrition
Nutritional Disclaimer
Please note that I am not a medical or nutritional professional. I am simply recounting and sharing my own experiences on this blog. Nothing I express here should be taken as medical advice and you should consult with your doctor before starting any diet or exercise program. I provide nutritional information for my recipes simply as a courtesy to my readers. It is calculated using MacGourmet software and I remove erythritol from the final carb count and net carb count, as it does not affect my own blood glucose levels. I do my best to be as accurate as possible but you should independently calculate nutritional information on your own before relying on them. I expressly disclaim any and all liability of any kind with respect to any act or omission wholly or in part in reliance on anything contained in this website.
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This is one of my go-to recipes when I am craving something sweet. It’s fast and easy with the blender and so tasty. Love the cinnamon butter!
Hello! What can I use to replace the Whey protein powder? Thank you!
Please read the blog post as I discuss this already.
Hi.. Befor I make these, Im wondering if homemade greek yogurt could be substituted for the cottage cheese?
Delicious! And so easy.
can you use Greek yogurt instead of cottage cheese?
No, they have very different liquid contents.
Delicious! These looked beautiful too.
Oh my goodness, this
Is going to be a much repeated recipe. They were good the first day and even better the second. Mine didn’t brown much, so I am glad that I didn’t bake until they were, otherwise they would have been over baked.
Great to hear!
As with all your recipes, loved this! I followed your recipe to a T and mine turned out a little dry. I only baked for 17 min, so don’t know if it was over baking or the whey I used. I use Nutricost Whey Isolate. The taste is fabulous, just wish they were a bit more moist. Would love your thoughts on how to troubleshoot. Thanks for all the great recipes – I love your new protein cookbook!