These mini keto pizza muffins are chock full of pepperoni and mozzarella, for a fun back-to-school snack. Dip them in sugar-free marinara sauce for real pizza flavor!
Close up shot of mini keto pizza muffins.

These mini keto pizza muffins are chock full of pepperoni and mozzarella, for a fun back-to-school snack. Dip them in sugar-free marinara sauce for real pizza flavor!

Titled image of a stack of mini keto pizza muffins with one on front.


 

Kids love pizza. It’s just a fact of life that we have to accept, I’m afraid. It seems to be the food of choice for school cafeterias and children’s birthday parties everywhere.

What we don’t have to accept is that pizza is, by necessity, full of junky carbs. I think that the ingenuity of keto dieters has proved that beyond a shadow of a doubt.

There are a million creative low carb ways to enjoy this American favorite, such as Crustless Pizza, Fathead Pizza, and Pizza Chicken. Really, the possibilities are endless!

A bowl full of mini keto pizza bites.

Keto Pizza Bites

I created these little keto pizza muffins long ago, as a healthy snack for my kids. They’re really fun and easy to make, and have all the great flavors of a classic pizza: cheese, pepperoni, and pizza seasoning.

And if you serve them warm dipped in a little sugar free marinara sauce, it really is like a little bite of pizza. Without all the carbs!

They’re a great after-school snack, but they can also be a party appetizer or even a delicious keto side dish.

Close up shot of mini keto pizza muffins.

How to make keto pizza muffins

Ready to make these little savory muffins? Let’s get started!

  1. Grease the pan well. This is critical for getting the mini muffins out in one piece. If you don’t have a good nonstick mini muffin pan, I recommend silicone or parchment liners.
  2. Whisk the dry ingredients. This is an almond flour recipe so be sure to break up any clumps in your flour as you whisk.
  3. Don’t skip the protein powder. Please refer to the Frequently Asked Questions for the importance of this ingredient!
  4. Add the cheese and pepperoni. I recommend chopping up good uncured pepperoni like Applegate or Organic Valley. The mini pepperoni bits are cute, but they’re also pretty junky and add nothing to the recipe but visual appeal!
  5. Stir in the wet ingredients. Mix it all by hand with a rubber spatula to combine well.
  6. Fill the mini muffin cups. These little muffins will rise a bit so don’t fill more than 3/4 full.
  7. Bake until lightly browned. They should be golden brown around the edges and just firm to the touch.
A hand dipping keto pizza muffins into marinara sauce.

Frequently Asked Questions

I can’t eat nuts, can I make this with coconut flour?

Yes, you can make these keto pizza muffins with coconut flour. Use my Keto Banana Muffins recipe as the base, leaving out the sweetener, extracts, and chocolate chips, and adding the herbs, mozzarella, and pepperoni.

What’s the protein powder for, can I skip it?

Gluten is a protein and in its absence, another dry protein powder helps baked goods rise and hold their shape. Whey protein and egg white protein work best, but I do not recommend collagen protein. If you choose to skip it, your muffins may not rise as well and will be more fragile.

Does it matter what brand of protein powder?

Not really, but I like this grassfed whey protein powder. For egg white protein, I like this brand.

Can I make these as regular muffins?

Absolutely! You will get 12 to 15 standard muffins out of this recipe and you will need to bake them for 25 minutes or so.

Mini keto pizza bites on a plate with a bowl of sugar free marinara sauce in the center.

More delicious keto pizza recipes

Close up shot of mini keto pizza muffins.
5 from 14 votes

Keto Pizza Muffins Recipe

Servings: 15 servings
Prep Time 15 minutes
Cook Time 20 minutes
Total Time 35 minutes
These mini keto pizza muffins are chock full of pepperoni and mozzarella, for a fun back-to-school snack. Dip them in sugar-free marinara sauce for real pizza flavor!

Ingredients
 

Instructions

  • Preheat the oven to 325F and grease a mini muffin pan very well or line with paper or parchment liners.
  • In a large bowl, whisk together the almond flour, protein powder, Italian seasoning, baking powder, garlic powder and salt. Stir in the cheese and pepperoni.
  • Whisk in the eggs, butter and almond milk until well combined. Fill the muffin cups about 3/4 full. (This makes about 30 mini muffins so you may need to do a second batch or make two or three larger muffins).
  • Bake 17 to 20 minutes, until the muffins are golden brown and just firm to the touch. Let cool in pan about 20 minutes, then transfer to a wire rack to cool completely.
  • Repeat with the remaining batter, if necessary.

Nutrition

Serving: 2mini muffins | Calories: 196kcal | Carbohydrates: 3.9g | Protein: 9g | Fat: 15.9g | Fiber: 1.7g
I’d love to know your thoughts, leave your rating below!

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5 from 14 votes (3 ratings without comment)

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Recipe Rating




59 Comments

  1. 5 stars
    Carolyn, I made these with my kiddos yesterday and they are stellar! Thank you again for making diabetes management, well… manageable. I know enjoying food shouldn’t be important, but it is, and your recipes just make my life better. I am so grateful!

    Oh we sprinkled parmesan on top and it was a most excellent addition!

  2. I love this idea but want to Kosher this recipe. Guess we could use a Vegan Pepperoni or Sausage option.

  3. Can I use collagen in place of protein powder? I only have chocolate and strawberry but no plain protein powder. Thanks !

  4. can egg whites be used instead of egg white powder? is there a substitute for protein powder. I don’t have either in stock.

    1. No, egg whites are a wet ingredient and would throw off the wet/dry ratios. Protein powder helps keto baked goods rise and hold their shape. You can use whey protein or vegan plant based protein.

  5. Christie Bacon says:

    5 stars
    These are a great addition to my teen’s birthday brunch with her friends (based on my mommy taste test :). How best to store overnight – in the fridge then microwave covered beforehand?

  6. 5 stars
    These make a great savory snack!

  7. I would love to try these! But don’t currently have any unflavoured protein powders. Would you happen to have any other alternatives? 😊

  8. Dawn Alford says:

    Do you think these would freeze well and be rewarmed either microwave or air fryer?

  9. 5 stars
    I made these for a Christmas party and they were a huge hit! They really do taste like pizza when you dip them in marinara sauce. Plus they’re easy to make and can be made ahead. It’s nice to have something I can eat at a party other than cheese and vegetables with dip.

  10. 5 stars
    Another amazing recipe! My husband says, “tell Carolyn thank you!” Super easy and delicious. I did make 12 regular muffins.

  11. I am looking for the recipe for strawberry panna cotta

  12. Instead of pepperoni would it be possible to use cooked ground sausage or seasoned cooked ground beef?

  13. These pizza muffins look fab but I only have pea protein powder on hand. Any idea how that would work in this recipe?

  14. Laura Reese says:

    5 stars
    These were really easy to make and delicious. Thanks for such a great keto friendly recipe!

  15. 5 stars
    My kids loved it!! We will be making it again this weekend!

  16. 5 stars
    These turned out really good, we ate them all u! They were easy to make too. Thanks for the recipe!

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